Welcome to MetDraw

Click on the above tabs to prepare and run Metdraw.

Parameters
Set rendering parameters to optimize the layout of your network.
Select Minors
Choose metabolites that should be re-drawn for each reaction (ATP, water, etc.)
Render
Run MetDraw and download the results.

Set rendering parameters to optimize the layout of your network.

ParameterValueDescription
Cluster subsystemsDraw and label each subsystem separately.
Show exchangesDraw transport and exchange reactions for each compartment.
CompactAttempt to draw reactions more compactly.
Show minorsInclude minor metabolites for each reaction.
Cluster minorsTry to keep minor metabolites close together in each reaction.
Max minorsMaximum number of minor metabolites drawn on each reaction. Additional minors are listed, not drawn.
Clone levelMajor metabolites in a subsystem that participate in this many reactions will be <i>cloned</i> and drawn separately.
Link clonesConnect cloned metabolites with a line.
Clone link attributesGraphviz parameters for drawing the lines between clones.
Compartment label fontsizeFont size for compartment labels.
Subsystem label fontsizeFont size for subsystem labels.
Subsystem border styleGraphviz style for drawing borders around subsystems.
Edge attributesGraphviz parameters for drawing edges.
Metabolite attributesGraphviz parameters for drawing major metabolites.
Minor metabolite attributesGraphviz parameters for drawing minor metabolites.
Invisible node attributesGraphviz parameters for drawing hidden nodes.
Metabolite label transformPython function applied to each metabolite ID to create the label text. The default transformation leaves the name unchanged.
Reaction label transformPython function applied to each reaction ID to create the label text. The default transformation leaves the name unchanged.

Identify minor (or "currency") metabolites.

These metabolites will be re-drawn for every reaction -- MetDraw will not try to connect minor metabolites that appear in separate reactions. Common minor metabolites include ATP, H2O, CO2, cofactors, and inorganics.

Minor?# of reactionsMetabolite ID
763M_cpd00067_c
505M_cpd00001_c
238M_cpd00002_c
203M_cpd00008_c
203M_cpd00009_c
129M_cpd00011_c
123M_cpd00003_c
122M_cpd00006_c
121M_cpd00005_c
119M_cpd00004_c
94M_cpd00010_c
92M_cpd00012_c
88M_cpd00067_e
79M_cpd11493_c
76M_cpd00007_c
63M_cpd00013_c
57M_cpd00023_c
49M_cpd00020_c
41M_cpd00080_c
38M_cpd00046_c
36M_cpd00018_c
32M_cpd11492_c
31M_cpd00017_c
31M_cpd00022_c
27M_cpd00033_c
26M_cpd00024_c
25M_cpd00054_c
22M_cpd00053_c
22M_cpd00052_c
22M_cpd00014_c
21M_cpd00035_c
21M_cpd00041_c
20M_cpd00015_c
20M_cpd00019_c
19M_cpd00100_c
19M_cpd00029_c
19M_cpd00982_c
18M_cpd00037_c
18M_cpd00025_c
18M_cpd15560_c
18M_cpd00036_c
17M_cpd15561_c
15M_cpd00106_c
15M_cpd00081_c
14M_cpd00061_c
14M_cpd00040_c
13M_cpd00056_c
13M_cpd00072_c
13M_cpd00103_c
13M_cpd00095_c
13M_cpd00047_c
12M_cpd00071_c
12M_cpd00102_c
12M_cpd00050_c
12M_cpd00084_c
12M_cpd00032_c
12M_cpd00108_c
12M_cpd15500_c
11M_cpd00064_c
11M_cpd00027_c
11M_cpd00971_e
11M_cpd11420_c
11M_cpd15499_c
11M_cpd00060_c
11M_cpd11421_c
10M_cpd01270_c
10M_cpd00971_c
10M_cpd00129_c
10M_cpd00130_c
10M_cpd00087_c
10M_cpd00026_c
10M_cpd00113_c
9M_cpd00038_c
9M_cpd00118_c
9M_cpd00139_c
9M_cpd00079_c
9M_cpd00091_c
9M_cpd00086_c
8M_cpd00031_c
8M_cpd00039_c
7M_cpd00242_c
7M_cpd00147_c
7M_cpd00449_c
7M_cpd00161_c
7M_cpd11466_c
7M_cpd00286_c
7M_cpd00101_c
7M_cpd00062_c
7M_cpd00069_c
7M_cpd15352_c
7M_cpd00125_c
6M_cpd00135_c
6M_cpd01695_c
6M_cpd00142_c
6M_cpd15353_c
6M_cpd00159_c
6M_cpd00309_c
6M_cpd00222_c
6M_cpd00216_c
6M_cpd00213_c
6M_cpd00092_c
6M_cpd00128_c
6M_cpd00042_c
6M_cpd00209_c
6M_cpd00201_c
6M_cpd00134_c
6M_cpd00066_c
6M_cpd00843_c
6M_cpd00346_c
6M_cpd00475_c
6M_cpd00119_c
6M_cpd15239_c
6M_cpd11468_c
6M_cpd00078_c
5M_cpd00205_e
5M_cpd00075_c
5M_cpd00176_c
5M_cpd00065_c
5M_cpd00236_c
5M_cpd00264_c
5M_cpd00094_c
5M_cpd00430_c
5M_cpd00226_c
5M_cpd00509_c
5M_cpd00421_c
5M_cpd15665_c
5M_cpd11476_c
5M_cpd00089_c
5M_cpd00219_c
5M_cpd00126_c
5M_cpd00171_c
5M_cpd00132_c
5M_cpd00082_c
5M_cpd00143_c
5M_cpd00107_c
5M_cpd15327_c
5M_cpd15329_c
5M_cpd00073_c
5M_cpd02431_c
5M_cpd00221_c
5M_cpd00085_c
5M_cpd00868_c
5M_cpd08615_c
5M_cpd00350_c
5M_cpd00297_c
5M_cpd00048_c
5M_cpd00609_c
5M_cpd00121_c
5M_cpd00123_c
5M_cpd03831_c
4M_cpd00205_c
4M_cpd11484_c
4M_cpd00247_c
4M_cpd00207_c
4M_cpd11435_c
4M_cpd00760_c
4M_cpd00137_c
4M_cpd11434_c
4M_cpd00109_c
4M_cpd00274_c
4M_cpd00330_c
4M_cpd00239_c
4M_cpd00438_c
4M_cpd00186_c
4M_cpd00106_e
4M_cpd02978_c
4M_cpd00027_e
4M_cpd00260_c
4M_cpd00515_c
4M_cPY00144_c
4M_cpd15525_c
4M_cpd00118_e
4M_cpd00114_c
4M_cpd00110_c
4M_cpd00428_c
4M_cpd00259_c
4M_cpd00199_c
4M_cpd15538_c
4M_cpd00169_c
4M_cpd00299_c
4M_cpd00120_c
4M_cpd00129_e
4M_cpd00218_c
4M_cpd01647_c
4M_cpd00282_c
4M_cpd00327_c
4M_cpd00288_c
4M_cpd00284_c
4M_cpd08289_c
4M_cpd00130_e
4M_cpd00522_c
4M_cpd00039_e
4M_cpd00277_c
4M_cpd00279_c
4M_cpd00231_c
4M_cpd00233_c
4M_cpd00722_c
4M_cpd00588_c
4M_cpd11432_c
4M_cpd03049_c
4M_cpd00873_c
4M_cpd11439_c
4M_cpd00182_c
4M_cpd00153_c
4M_cpd00340_c
4M_cpd15524_c
4M_cpd15522_c
4M_cpd15526_c
4M_cpd00650_c
4M_cpd00227_c
4M_cpd00223_c
4M_cpd00117_c
4M_cpd02546_c
4M_cpd00193_c
4M_cpd00198_c
4M_cpd00051_c
4M_cpd00098_c
4M_cpd11825_c
4M_cpd00837_c
4M_cpd11441_c
4M_cpd15331_c
4M_cpd00290_c
4M_cpd00851_c
4M_cpd00481_c
4M_cpd00093_c
4M_cpd00083_c
4M_cpd00854_c
4M_cpd11437_c
4M_cpd00412_c
3M_cpd00287_c
3M_cpd00289_c
3M_cpd02692_c
3M_cpd15423_c
3M_cpd03116_c
3M_cPY00134_c
3M_cpd00774_c
3M_cpd00200_c
3M_cpd15421_c
3M_cpd00133_c
3M_cpd02229_c
3M_cpd01242_c
3M_cpd00033_e
3M_cpd11572_c
3M_cpd00034_e
3M_cpd00149_c
3M_cJB00020_c
3M_cpd00533_c
3M_cpd00064_e
3M_cpd00036_e
3M_cpd00524_c
3M_cpd03326_c
3M_cpd00666_c
3M_cpd01882_c
3M_cpd15417_c
3M_cPY00126_c
3M_cpd15418_c
3M_cpd00599_c
3M_cpd15684_c
3M_cpd02211_c
3M_cpd00658_c
3M_cpd00023_e
3M_cpd15683_c
3M_cpd03917_c
3M_cpd02835_c
3M_cpd15688_c
3M_cpd00447_c
3M_cJB00010_c
3M_cpd02065_c
3M_cpd15523_c
3M_cpd00345_c
3M_cpd00156_c
3M_cpd15521_c
3M_cpd00347_c
3M_cpd00058_e
3M_cpd15527_c
3M_cpd01092_c
3M_cpd00229_c
3M_cpd00516_c
3M_cpd01507_c
3M_cpd00653_c
3M_cpd02666_c
3M_cpd02140_c
3M_cpd02625_c
3M_cpd00055_c
3M_cpd00978_c
3M_cpd11494_c
3M_cpd00294_c
3M_cpd00196_c
3M_cpd00296_c
3M_cpd00191_c
3M_cpd00210_c
3M_cpd11472_c
3M_cpd11470_c
3M_cpd02201_c
3M_cpd00254_e
3M_cpd02711_c
3M_cpd00096_c
3M_cpd00358_c
3M_cpd11565_c
3M_cpd00162_c
3M_cpd00164_c
3M_cpd00510_c
3M_cpd02498_c
3M_cpd11480_c
3M_cpd00485_c
3M_cpd00498_c
3M_cpd11482_c
3M_cpd00202_c
3M_cpd00638_c
3M_cpd03587_c
3M_cpd00246_c
3M_cpd02893_c
3M_cpd00177_c
3M_cpd02394_c
3M_cpd00136_c
3M_cJB00078_c
3M_cPY00131_c
3M_cJB00106_c
3M_cpd15540_c
3M_cpd00790_c
3M_cpd02255_c
3M_cpd15310_c
3M_cpd01155_c
3M_cpd02465_c
3M_cpd00443_c
3M_cpd15422_c
3M_cpd10515_c
3M_cpd00322_c
3M_cpd00141_c
3M_cpd03607_c
3M_cpd15420_c
3M_cpd00238_c
3M_cpd02631_c
3M_cpd00668_c
3M_cpd00235_c
3M_cpd15419_c
3M_cPY00121_c
3M_cJB00068_c
3M_cpd00105_c
3M_cpd00105_e
3M_cpd00146_c
3M_cpd02678_c
3M_cpd02210_c
3M_cpd00108_e
3M_cpd02083_c
3M_cpd03914_c
3M_cpd03495_c
3M_cpd11540_c
3M_cpd00477_c
3M_cpd00157_c
3M_cpd00151_c
3M_cpd00478_c
3M_cpd00652_c
3M_cpd01620_c
3M_cpd00342_c
3M_cpd00508_c
3M_cpd01966_c
3M_cpd15687_c
3M_cpd15685_c
3M_cpd00119_e
3M_cJB00120_c
3M_cpd15686_c
3M_cpd00497_c
3M_cpd00298_c
3M_cpd01012_e
3M_cpd01017_c
3M_cpd00016_c
3M_cJB00052_c
3M_cpd00209_e
3M_cpd04242_c
3M_cpd11515_c
3M_cpd15532_c
3M_cpd00295_c
3M_cpd00367_c
3M_cpd00683_c
3M_cpd00703_c
3M_cpd03708_c
3M_cpd02187_c
3M_cpd00048_e
3M_cpd02125_c
3M_cpd15539_c
3M_cpd00954_c
3M_cpd02333_c
3M_cpd03279_c
3M_cpd00489_c
3M_cpd00483_c
3M_cpd00781_c
3M_cpd02851_c
3M_cpd00858_c
3M_cpd00041_e
3M_cpd00043_c
3M_cpd00009_e
3M_cpd00540_c
3M_cpd02168_c
3M_cpd00791_c
3M_cpd00797_c
3M_cpd11487_c
3M_cpd11481_c
3M_cpd00281_c
2M_cpd03114_c
2M_cpd00203_c
2M_cpd11592_c
2M_cpd11592_e
2M_cpd11590_e
2M_cpd11590_c
2M_cpd03736_c
2M_cpd01720_c
2M_cpd00283_c
2M_cpd15546_c
2M_cpd03586_c
2M_cpd00408_c
2M_cpd00834_c
2M_cpd03423_c
2M_cpd03449_c
2M_cpd00911_c
2M_cpd15469_c
2M_cpd00208_c
2M_cpd00424_c
2M_cpd00073_e
2M_cpd08288_c
2M_cJB00070_c
2M_cpd11596_c
2M_cJB00072_c
2M_cJB00082_c
2M_cpd02961_c
2M_cpd15294_c
2M_cpd03446_c
2M_cJB00084_c
2M_cpd00176_e
2M_cJB00086_c
2M_cpd02920_c
2M_cpd11621_c
2M_cpd02968_c
2M_cpd15603_c
2M_cpd01977_c
2M_cpd00764_c
2M_cpd00137_e
2M_cPY00132_c
2M_cpd03444_c
2M_cPY00136_c
2M_cPY00130_c
2M_cpd01710_c
2M_cJB00105_c
2M_cJB00109_c
2M_cpd01242_e
2M_cJB00107_c
2M_cpd00035_e
2M_cpd01716_c
2M_cpd00581_c
2M_cpd02843_c
2M_cpd02884_c
2M_cpd01651_c
2M_cJB00069_c
2M_cpd01324_c
2M_cPY00154_c
2M_cpd11538_c
2M_cPY00156_c
2M_cpd00819_c
2M_cpd11534_c
2M_cpd11576_e
2M_cpd11536_c
2M_cpd11570_c
2M_cpd11530_c
2M_cJB00103_c
2M_cpd15488_c
2M_cpd11532_c
2M_cpd00331_c
2M_cpd02591_c
2M_cpd02597_c
2M_cpd11575_e
2M_cpd14702_c
2M_cpd14700_c
2M_cpd11579_e
2M_cpd11579_c
2M_cpd00567_c
2M_cpd02738_c
2M_cpd00149_e
2M_cpd04918_c
2M_cPY00151_c
2M_cPY00129_c
2M_cpd15557_c
2M_cpd15555_c
2M_cpd00075_e
2M_cpd15722_c
2M_cPY00160_c
2M_cpd00531_e
2M_cpd11830_c
2M_cpd10162_c
2M_cpd15726_c
2M_cpd15550_c
2M_cpd15720_c
2M_cpd15556_c
2M_cpd15552_c
2M_cpd10516_c
2M_cpd10516_e
2M_cpd00068_c
2M_cpd00144_c
2M_cpd03320_c
2M_cpd01329_e
2M_cPY00159_c
2M_cpd00520_c
2M_cpd15328_c
2M_cpd15326_c
2M_cpd01298_c
2M_cpd15605_c
2M_cpd15605_e
2M_cpd11501_c
2M_cpd02535_c
2M_cpd15675_c
2M_cpd15679_c
2M_cpd15677_c
2M_cpd00063_e
2M_cpd11596_e
2M_cpd04097_e
2M_cpd11503_c
2M_cpd00275_c
2M_cpd00122_e
2M_cpd00802_c
2M_cpd08625_c
2M_cpd00800_c
2M_cpd03491_c
2M_cPY00124_c
2M_cpd02068_c
2M_cPY00122_c
2M_cpd00104_c
2M_cJB00118_c
2M_cPY00120_c
2M_cpd02060_c
2M_cpd00100_e
2M_cpd15673_c
2M_cpd15671_c
2M_cpd11551_c
2M_cpd15725_c
2M_cpd00264_e
2M_cpd03122_c
2M_cpd00731_c
2M_cpd03048_c
2M_cpd03048_e
2M_cpd11507_c
2M_cpd00386_c
2M_cpd00438_e
2M_cpd00337_c
2M_cpd00184_c
2M_cpd00184_e
2M_cpd00770_c
2M_cpd00382_c
2M_cpd00876_c
2M_cpd11542_c
2M_cpd11544_c
2M_cpd15325_c
2M_cJB00111_c
2M_cJB00113_c
2M_cpd09027_c
2M_cpd01048_e
2M_cPY00016_e
2M_cJB00115_c
2M_cpd11555_c
2M_cJB00117_c
2M_cpd00738_c
2M_cpd00029_e
2M_cJB00119_c
2M_cpd02439_c
2M_cPY00119_c
2M_cpd03913_c
2M_cpd11549_c
2M_cpd00159_e
2M_cPY00146_c
2M_cpd08210_c
2M_cpd15604_e
2M_cpd00573_c
2M_cpd03915_c
2M_cPY00140_c
2M_cpd03518_c
2M_cpd11546_c
2M_cpd00809_c
2M_cpd08021_c
2M_cpd08023_e
2M_cpd08023_c
2M_cpd03494_c
2M_cpd00307_c
2M_cpd00307_e
2M_cPY00113_e
2M_cJB00012_c
2M_cpd00309_e
2M_cpd11541_c
2M_cpd11508_c
2M_cpd15681_c
2M_cpd00152_c
2M_cpd00343_c
2M_cPY00149_c
2M_cpd00504_c
2M_cpd00863_c
2M_cpd00506_c
2M_cPY00141_c
2M_cPY00143_c
2M_cpd01092_e
2M_cpd00830_c
2M_cpd02113_c
2M_cpd14699_c
2M_cpd00655_c
2M_cpd00836_c
2M_cPY00114_c
2M_cpd00011_e
2M_cpd02626_c
2M_cpd00013_e
2M_cpd11479_c
2M_cpd00226_e
2M_cpd00945_c
2M_cpd00423_e
2M_cpd00224_c
2M_cpd11586_c
2M_cpd14960_c
2M_cpd00395_e
2M_cpd00931_c
2M_cpd00220_c
2M_cpd11580_c
2M_cpd01775_c
2M_cpd08368_c
2M_cpd02882_c
2M_cpd03424_e
2M_cpd03002_c
2M_cpd11490_c
2M_cpd03724_e
2M_cpd02547_c
2M_cpd03128_c
2M_cpd02904_c
2M_cpd11474_c
2M_cpd00860_c
2M_cpd02507_c
2M_cpd11497_c
2M_cpd09878_c
2M_cpd00742_c
2M_cpd00938_c
2M_cpd00292_c
2M_cpd11499_c
2M_cpd03091_c
2M_cpd03426_c
2M_cpd00810_c
2M_cpd03666_c
2M_cpd02186_c
2M_cpd02828_c
2M_cpd03121_c
2M_cpd02182_c
2M_cJB00121_c
2M_cpd03129_c
2M_cpd01260_c
2M_cpd01262_e
2M_cpd03421_c
2M_cpd01735_c
2M_cJB00054_c
2M_cJB00054_e
2M_cpd11558_c
2M_cpd03762_c
2M_cpd03760_c
2M_cpd00099_e
2M_cpd00254_c
2M_cpd03126_c
2M_cpd11510_c
2M_cpd00092_e
2M_cPY00061_c
2M_cpd11512_c
2M_cpd11588_e
2M_cpd11588_c
2M_cpd03124_c
2M_cpd00161_e
2M_cpd00090_c
2M_cpd11557_c
2M_cpd00480_c
2M_cpd15719_c
2M_cpd00044_c
2M_cPY00085_c
2M_cpd00001_e
2M_cpd11509_c
2M_cpd15717_c
2M_cpd01476_c
2M_cpd11516_c
2M_cpd11514_c
2M_cpd00641_c
2M_cpd00007_e
2M_cpd11563_c
2M_cPY00088_c
2M_cpd11469_c
2M_cpd00355_c
2M_cpd00166_c
2M_cpd00357_c
2M_cpd00525_c
2M_cpd00162_e
2M_cPY00087_c
2M_cpd00164_e
2M_cpd15531_c
2M_cpd00890_c
2M_cpd00894_c
2M_cpd00794_c
2M_cpd11561_c
2M_cpd00361_c
2M_cpd00367_e
2M_cpd11581_e
2M_cpd02120_c
2M_cpd11583_c
2M_cpd11583_e
2M_cpd00521_c
2M_cpd02654_c
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1M_cpd01570_c
1M_cJB00079_c
1M_cJB00075_c
1M_cpd02096_c
1M_cpd15378_c
1M_cJB00030_e
1M_cpd02090_c
1M_cJB00034_e
1M_cJB00034_c
1M_cJB00040_c
1M_cJB00038_c
1M_cpd00281_e
1M_cPY00062_c
1M_cpd09410_c
1M_cpd00076_c
1M_cpd15765_c
1M_cpd15767_c